1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tagaagatgttccaatctaaagatatcaactaggatttatattgaagctacctaagtataatcagtggcattttgttctcattttttgtgatttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG
species | Physcomitrella patens |
transcript | PP1S46_310V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCAEST: gi|100353527|gb|BY964851.1|BY964851
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCA
EST: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCAEST: gi|208370333|gb|DC931745.1|DC931745
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCA
EST: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCAEST: gi|100424319|gb|BY958425.1|BY958425
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCA
EST: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCAEST: gi|162230406|gb|FC407074.1|FC407074
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCA
EST: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCAEST: gi|100446301|gb|CJ970600.1|CJ970600
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCA
EST: ACAATCTATGTTACAAGACGTANCANACTTAAGACTCACCGATTCTGATG GACAAGTACGAGTTCCA
genomic: ACAATCTATGTTACAAGACGTAGCAGACTTAAGACTCACCGATTCTGATGgtaacatgcc ... atttttgtagGACAAGTACGAGTTCCA
agctacctaagtataatcagtggcattttgttctcattttttgtgatttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG
tttttgt CT-rich tract
attttttgtgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaagatgttccaatctaaagatatcaactaggatttatattgaagctacctaagtataatcagtggcattttgttctcattttttgtgatttttgtagGACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC