1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcagaggagctttacaaagcgcttgcgtattgtaaaggtaatttgggcaagaggaacacctgtgtcttttatgtcactaactagtggatgtaatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAAATTTCTGCTGTTGGACTTTTTAGTTCTGGCTGTAATGTGGCCCTTCTA
species | Physcomitrella patens |
transcript | PP1S433_16V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAEST: gi|208350251|gb|DC925727.1|DC925727
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAEST: gi|37832759|gb|BJ590771.1|BJ590771
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAEST: gi|208394845|gb|DC915638.1|DC915638
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAEST: gi|37823243|gb|BJ581309.1|BJ581309
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAEST: gi|67693692|gb|BJ953925.1|BJ953925
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
EST: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGG GAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
genomic: AGACCGTACTATGGGTACCGCTCCAGGAGGCCCTATCCGCCCCCCTATGGgtatgcttcc ... taatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGA
ggcaagaggaacacctgtgtcttttatgtcactaactagtggatgtaatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAAATTTCTGCTGTTGGACTTTTTAGTTCTGGCTGTAATGTGGCCCTTCTA
cactaac putative branch site (score: 6)
tcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagaggagctttacaaagcgcttgcgtattgtaaaggtaatttgggcaagaggaacacctgtgtcttttatgtcactaactagtggatgtaatgtgcagGAAAGTACCCAGGTTCAGGAGGCCAATGCGTTACAGACCTTATTATTAGGAAATTTCTGCTGTTGGACTTTTTAGTTCTGGCTGTAATGTGGCCCTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT