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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcattagggaagaagctcctggttgtgcatcactagtccacgaaccatttcaaggttgtgacctattgaatgaagttggcgtgtattaatgcatgacagGTCACTGGTGAACGATTCGTATAGGACTGACCTCATCCTGATGTACCCACCTTTCATGATTGCACTTGCATGCATCTACATCGCTAGCGTGCTCAAAGAG

Basic information

species Physcomitrella patens
transcript PP1S427_18V6.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S427_18V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ10868 (Selaginella moellendorffii), 3'ss of exon 7
ttcattagggaagaagctcctggttgtgcatcactagtccacgaaccatttcaaggttgtgacctattgaatgaagttggcgtgtattaatgcatgacagGTCACTGGTGAACGATTCGTATAGGACTGACCTCATCCTGATGTACCCACCTTTCATGATTGCACTTGCATGCATCTACATCGCTAGCGTGCTCAAAGAG
                                |  | |   ||   | |||| | | ||| |   |            | ||||  |    || |  ||||||  | ||||||||||||||| | || || ||||| |||||| | ||||||| |||||| || || || |||||||||||| |  ||||| |||| |||
------------------------------gtaacactttgcgtctcgtttctaagctgtcaatcac-----------gccgtgctt----gccttgcagGTCCATAGTGAACGATTCGTATGGAACCGATCTCATACTGATGCATCCACCTTACATGATCGCTCTGGCGTGCATCTACATCTCGTGCGTGATCAACGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttcaaggttgtgacctattgaatgaagttggcgtgtattaatgcatgacagGTCACTGGTGAACGATTCGTATAGGACTGACCTCATCCTGATGTACCCACCTTTCATGATTGCACTTGCATGCATCTACATCGCTAGCGTGCTCAAAGAG
                                       tattaat  putative branch site (score: 2)
                                     tgtattaat  TA-rich tract