1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attaggggcaggaatcccgtctgtgctgtgagactgaccttaatttcttgagtgctcttattggctagatgctcatccagtaggaccatgaatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAGAAAGTGACTCAGGAGAAACGTATGCAAATGCTGAAGGACTCGGGCATTG
species | Physcomitrella patens |
transcript | PP1S425_16V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTAATGNTGATATACCAACAGATCCGNTGGAGCACAAG GGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAGEST: gi|162265882|gb|FC442885.1|FC442885
genomic: TTAATGTTGATATACCAACAGATCCGTTGGAGCACAAGgtaaaatgaa ... aatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAG
EST: AAGGTTTCTTTTTTAATGTTGATATACCAACAGATCCGTTGGAGCACAAG GGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTEST: gi|37850380|gb|BJ608388.1|BJ608388
genomic: AAGGTTTCTTTTTTAATGTTGATATACCAACAGATCCGTTGGAGCACAAGgtaaaatgaa ... aatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATT
EST: TTTAATGTTGATATACCANCAGATCCGTTGGAGCACAAG GGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAGEST: gi|208367233|gb|DC951221.1|DC951221
genomic: TTTAATGTTGATATACCAACAGATCCGTTGGAGCACAAGgtaaaatgaa ... aatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAG
EST: AAGGTTTCTTTTTTAATGTTGATATACCAACAGATCCGTTGGAGCACAAG GGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAG
genomic: AAGGTTTCTTTTTTAATGTTGATATACCAACAGATCCGTTGGAGCACAAGgtaaaatgaa ... aatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAG
tcttgagtgctcttattggctagatgctcatccagtaggaccatgaatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAGAAAGTGACTCAGGAGAAACGTATGCAAATGCTGAAGGACTCGGGCATTG
tcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaggggcaggaatcccgtctgtgctgtgagactgaccttaatttcttgagtgctcttattggctagatgctcatccagtaggaccatgaatctggcagGGGTACAAGGTGACAAGGCAAGGTACTTCCCGATTGCCCTTAAAATGGAAGAAAGTGACTCAGGAGAAACGTATGCAAATGCTGAAGGACTCGGGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG