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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgcaattgggcatctatcatatgttggtttgcgcttctacttagcttgctgctttaaatttacagaacattgcagttggcttgagaccattatcaagtttgacattgttcgttttgtctattccagGTTGTTGAACAACAAACTTTCTGAAGACAGAGTTTACGAGATAGTCTGTGAGGCTGTGGTGATTGAACAGGAATTTGTGTGCGAGGCTTTGTCATGCGAC

Basic information

species Physcomitrella patens
transcript PP1S41_228V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846360|gb|BJ604368.1|BJ604368
EST:     ATTTCACGAGATGAGGGCTTACACTGCGATTTTGCATGCCTTCTGTACAC                         GTTGTTGAACAACAAACTTTCTGAAGACAGAGTTTACGAGATAGTCTGTGA
genomic: ATTTCACGAGATGAGGGCTTACACTGCGATTTTGCATGCCTTCTGTACACgtaagtcgca ... tctattccagGTTGTTGAACAACAAACTTTCTGAAGACAGAGTTTACGAGATAGTCTGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagttggcttgagaccattatcaagtttgacattgttcgttttgtctattccagGTTGTTGAACAACAAACTTTCTGAAGACAGAGTTTACGAGATAGTCTGTGAGGCTGTGGTGATTGAACAGGAATTTGTGTGCGAGGCTTTGTCATGCGAC
                         gtttgac  putative branch site (score: 4)
                                        ttttgtct  putative PPT
                 attatcaa  TA-rich tract