1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataatgtcgtttcgtaaatttgttaaactgttaagacttaagttgtttgttgctcgagagtctgctagtattatgctaatatgtcttggttgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAAGCTTGGGAGGCAGCGAAGAGGAAATGTGGTGGTCTTCACTTCTTGGCT
species | Physcomitrella patens |
transcript | PP1S41_1V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCG TTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAEST: gi|162204756|gb|FC381139.1|FC381139
genomic: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCGgtaagtgctg ... tgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGA
EST: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCG TTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAEST: gi|162233825|gb|FC409675.1|FC409675
genomic: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCGgtaagtgctg ... tgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGA
EST: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCG TTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAEST: gi|162233826|gb|FC409676.1|FC409676
genomic: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCGgtaagtgctg ... tgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGA
EST: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCG TTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGA
genomic: GTGGATACACAACGGTCTTGCCTTGTGCTCTCCACTGGCGTGGCAGATCGgtaagtgctg ... tgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGA
tttgttgctcgagagtctgctagtattatgctaatatgtcttggttgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAAGCTTGGGAGGCAGCGAAGAGGAAATGTGGTGGTCTTCACTTCTTGGCT
tgctaat putative branch site (score: 13)
tattatgctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgtcgtttcgtaaatttgttaaactgttaagacttaagttgtttgttgctcgagagtctgctagtattatgctaatatgtcttggttgtgaaccagTTGGAGGTATGCTTTCTATCGCAAAAGCCGGCAGACAGATGCAGAAGGTGAAGCTTGGGAGGCAGCGAAGAGGAAATGTGGTGGTCTTCACTTCTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG