1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatttttgtgctttatgtgaccggagtctactgatctttcaatagcgtactcagtattaagatatgtgttgatacagatcagaaggtttatgtagacgactgtatctattatgtggtggtgaattccagcccaaaagtctgaaatacgaaattaatgactaaccctgtatgtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACATAAAGAACTTCAG
species | Physcomitrella patens |
transcript | PP1S41_172V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCG AATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACATEST: gi|162272513|gb|FC447684.1|FC447684
genomic: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCGgtaatttttg ... gtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACAT
EST: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCG AATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACATEST: gi|208397812|gb|DC912021.1|DC912021
genomic: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCGgtaatttttg ... gtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACAT
EST: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCG AATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACAT
genomic: CTGAACTGGAGGGCAAGCTGGAGAGTTCCAAAGAAGGTCGAGAGGATTCGgtaatttttg ... gtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACAT
ccagcccaaaagtctgaaatacgaaattaatgactaaccctgtatgtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACATAAAGAACTTCAG
gactaac putative branch site (score: 5)
aaatacgaaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttgtgctttatgtgaccggagtctactgatctttcaatagcgtactcagtattaagatatgtgttgatacagatcagaaggtttatgtagacgactgtatctattatgtggtggtgaattccagcccaaaagtctgaaatacgaaattaatgactaaccctgtatgtgagtccagAATGAGCGACAAGCTGCGTTAATAGAGTTGAATACTGTGGAAAAGAAACATAAAGAACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC