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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttcgtgtattgttcctgtcagtagacaaccttcccagggttcgcagcttgggtgtttgttttttcgtttttttaaaattctcttatcggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG

Basic information

species Physcomitrella patens
transcript PP1S407_7V6.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161524|gb|FC338731.1|FC338731
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
EST: gi|162184196|gb|FC360463.1|FC360463
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
EST: gi|208379607|gb|DC927104.1|DC927104
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTNTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
EST: gi|67574848|gb|BJ947672.1|BJ947672
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAN                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTT
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTT
EST: gi|208354688|gb|DC934180.1|DC934180
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
EST: gi|208346695|gb|DC913341.1|DC913341
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
EST: gi|100362562|gb|BY947415.1|BY947415
EST:     GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAG                         GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC
genomic: GGGAGCACTACCAGTGGAATATGGACATCATTGGCGTTCCCGGAGTTGAGgcaagcagcg ... ggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcttgggtgtttgttttttcgtttttttaaaattctcttatcggtgttacagGCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG
                ttttttcgttttttta  TA-rich tract