Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaggttggattggttgacgatatttcacaggagcttttacttcttaaatggttatgtgcccaattgttattccatacgctcagatggtttttgtctgtccctgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCTTACAAG

Basic information

species Physcomitrella patens
transcript PP1S39_426V6.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_426V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EDP05517 (Chlamydomonas reinhardtii), 3'ss of exon 4
gtaagtaggttggattggttgacgatatttcacagga-gcttttacttcttaaatggttatgtgcccaattgttattccatacgctcagatggtttttgtctgtccctgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCTTACAAG
             |  |  |   |      | |||   | || |   ||  |||      ||  |  ||| |   |  |     | || ||    |    || |   |    | ||||| |||||||| |||||||| || ||||||||||| |||||| |||| || ||||||
-------------aacgactacaggcggcgcgcagtctgattgtgaatcccaaagaacactg-actgaatcgccgtaacgc---cacacattacgtccaacttttgttaccgcgcagGGCGTGAACCCCTGGATTGAGGTTGACGGTGGCGTGACCCCCGAGAACGCCTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833557|gb|BJ591569.1|BJ591569
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208357253|gb|DC949897.1|DC949897
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|67692054|gb|BJ952287.1|BJ952287
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208380177|gb|DC927456.1|DC927456
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208354171|gb|DC957405.1|DC957405
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162280157|gb|FC455966.1|FC455966
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208385582|gb|DC937127.1|DC937127
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAA-TGTGTGCAGAGAAG                         G-TGTGAACC-ATGGAT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGAT
EST: gi|162224493|gb|FC399869.1|FC399869
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208378510|gb|DC927207.1|DC927207
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162224842|gb|FC401050.1|FC401050
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162253040|gb|FC429101.1|FC429101
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162212930|gb|FC388938.1|FC388938
EST:     CGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: CGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208376833|gb|DC918760.1|DC918760
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208392822|gb|DC957089.1|DC957089
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|22492052|gb|BU051975.1|BU051975
EST:     AATCTCATGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162242348|gb|FC418899.1|FC418899
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162265759|gb|FC443165.1|FC443165
EST:     CAGGTCAAGAAGATCGCTGACTTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: CAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162224843|gb|FC401051.1|FC401051
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162260605|gb|FC436609.1|FC436609
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162270061|gb|FC446761.1|FC446761
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|37845832|gb|BJ603840.1|BJ603840
EST:     AATCTCAGGTCAAGAAGATCGNTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGNCGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|22131605|gb|BQ826700.1|BQ826700
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208381445|gb|DC927881.1|DC927881
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162228610|gb|FC405430.1|FC405430
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162228609|gb|FC405429.1|FC405429
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208368905|gb|DC947463.1|DC947463
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162250798|gb|FC426842.1|FC426842
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|67723693|gb|BJ973952.1|BJ973952
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208368955|gb|DC955040.1|DC955040
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|37833414|gb|BJ591426.1|BJ591426
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208378784|gb|DC918932.1|DC918932
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162205375|gb|FC382084.1|FC382084
EST:     GTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: GTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208356564|gb|DC922354.1|DC922354
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAA-CCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162270060|gb|FC446760.1|FC446760
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162250799|gb|FC426843.1|FC426843
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208366270|gb|DC947528.1|DC947528
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|67695564|gb|BJ955797.1|BJ955797
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|37834722|gb|BJ592734.1|BJ592734
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACAGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208357190|gb|DC926537.1|DC926537
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162242347|gb|FC418898.1|FC418898
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|67579393|gb|BJ951514.1|BJ951514
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162264352|gb|FC440518.1|FC440518
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208374001|gb|DC944734.1|DC944734
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162280156|gb|FC455965.1|FC455965
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|22132256|gb|BQ827060.1|BQ827060
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162230707|gb|FC406130.1|FC406130
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|37832291|gb|BJ590303.1|BJ590303
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|162212929|gb|FC388937.1|FC388937
EST:     CGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: CGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|37829202|gb|BJ587214.1|BJ587214
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
EST: gi|208347457|gb|DC925369.1|DC925369
EST:     AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAG                         GGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT
genomic: AATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 96

GATTTTGATTATGTCTGTCAACCCTGGATTCGGTGGGCAGAGCTTTATCGAATCTCAGGTCAAGAAGATCGCTGACCTCCGGAAAATGTGTGCAGAGAAGgtaagtaggt ... tgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCTTACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccaattgttattccatacgctcagatggtttttgtctgtccctgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCTTACAAG
                               tttttgtctgtccct  CT-rich tract
     aattgttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaggttggattggttgacgatatttcacaggagcttttacttcttaaatggttatgtgcccaattgttattccatacgctcagatggtttttgtctgtccctgtgacccagGGTGTGAACCCATGGATTGAAGTAGACGGTGGCGTCACCCCCAAGAATGCTTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG