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gtatggtttgtgcacctgaaatagtgacttgggaccttcaattgacgcatgtcgctccaagtcgtcctggatttacgttgatgccattctagtccttgattttaaaaattattatccttattatgatttcatcttgataccctctgtatcctgttaagggcttcatattagtgctaaccatttgcaacaaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATG
species | Physcomitrella patens |
transcript | PP1S39_248V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAA- GTCGAGAAGTTGGG-AAGGACACTTTGCTNA-TGTCGCTAAGACCAGCATGEST: gi|100441417|gb|BY962706.1|BY962706
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|100360990|gb|BY946858.1|BY946858
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|208347324|gb|DC909715.1|DC909715
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGTGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGGCCAGCATGEST: gi|100417876|gb|BY993228.1|BY993228
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|208360034|gb|DC934923.1|DC934923
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|100449912|gb|CJ973999.1|CJ973999
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|18373059|gb|BJ204661.1|BJ204661
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGEST: gi|67719559|gb|BJ969818.1|BJ969818
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
EST: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAA GTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
genomic: TTGCCATGCGTGAGGCGTGCAAATATATCGATGACAAGCTTGCTACAAAAgtatggtttg ... caaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATG
tctgtatcctgttaagggcttcatattagtgctaaccatttgcaacaaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATG
tgctaac putative branch site (score: 1)
ttcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtttgtgcacctgaaatagtgacttgggaccttcaattgacgcatgtcgctccaagtcgtcctggatttacgttgatgccattctagtccttgattttaaaaattattatccttattatgatttcatcttgataccctctgtatcctgttaagggcttcatattagtgctaaccatttgcaacaaaatgcagGTCGAGAAGTTGGGGAAGGACACTTTGCTTAATGTCGCTAAGACCAGCATGTCTTCCAAAATTATTGGGCCTGAATCCGATTTTTTTGCAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG