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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatggagagcacatttctccttagcgtgaccctagttctctagttctcaatttgtggtaaaatgttcgtttttcttaatatgcacaatgttgcttattttgtatcacgcctttttgaacacgccgaactttgctactgttgatgagcagTGGCAGGAGCCAGATTGACAGGAATGAAGATGGCACGAAGGATGAGGGACATCGACGAGTTTGCATTTGAAACATTAGGCAGCAATCATCAACAAGGG

Basic information

species Physcomitrella patens
transcript PP1S395_50V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208392585|gb|DC938550.1|DC938550
EST:     AGTGGCTGGTTCAGCGGTTGGCTCGGCTGCAGTGACAGCCTCTTTTGGAG                         TGGCAGGAGCCAGATTGACAGGAATGAAGATGGCACGAAGGATGAGGGACA
genomic: AGTGGCTGGTTCAGCGGTTGGCTCGGCTGCAGTGACAGCCTCTTTTGGAGgtgatggaga ... tgatgagcagTGGCAGGAGCCAGATTGACAGGAATGAAGATGGCACGAAGGATGAGGGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttgtatcacgcctttttgaacacgccgaactttgctactgttgatgagcagTGGCAGGAGCCAGATTGACAGGAATGAAGATGGCACGAAGGATGAGGGACATCGACGAGTTTGCATTTGAAACATTAGGCAGCAATCATCAACAAGGG
                                          tgttgat  putative branch site (score: 4)
                tttttgaa  TA-rich tract