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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgcagttagatccccttccacaattcgattacatttatactattttatgcaagtttcaaggatgttcagtctgaatgcataacattcatggatgtgtagGTAACAAAGGAATCTCTTGATAAAGCAATCTCCATCTGCGGACCAGGTGTCGAGTTCAAAAAAATTGGCAGGACTATCAA

Basic information

species Physcomitrella patens
transcript PP1S392_8V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359529|gb|DC954082.1|DC954082
EST:     AGACTTTCTATTGTGGTAATGTTAGTGATGAAGCTAAACAGCTAGTTGAG                         GTAACAAAGGAATCTCTTGATAAAGCAATCTCCATCTGCGGACCAGGTGTC
genomic: AGACTTTCTATTGTGGTAATGTTAGTGATGAAGCTAAACAGCTAGTTGAGgtgggccatc ... ggatgtgtagGTAACAAAGGAATCTCTTGATAAAGCAATCTCCATCTGCGGACCAGGTGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgcaagtttcaaggatgttcagtctgaatgcataacattcatggatgtgtagGTAACAAAGGAATCTCTTGATAAAGCAATCTCCATCTGCGGACCAGGTGTCGAGTTCAAAAAAATTGGCAGGACTATCAA
                                gcataac  putative branch site (score: 3)
                                  ataacatt  TA-rich tract