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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgcagtctgggttggaaagtgaaagttgatgggtgactgcgtgggttttatgcgatgcgacggcggggttgtggagtgttgggttgggagatgaatcacgtgggggtgatggggcttttgttgataggaggagtatttgctgacggggtgggtggtttgttttggttttgtgtgggcagCCTGCATGGGGGCACCACCAAGACCCGAATCAATGGAATGCAGCTGGGTATTACCAAGGGTATGCACAAGGGTACGACCAATACGGATATCCGGCGCCGG

Basic information

species Physcomitrella patens
transcript PP1S391_69V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191668|gb|FC367713.1|FC367713
EST:     CAGTGCGTCTGTCGTGGGGTAGAAGTCCCGGGAACAAGCAGACGAGTGAT                         CCTGCATGGGGGCACCACCAAGACCCGAATCAATGGAATGCAGCTGGGTAT
genomic: CAGTGCGTCTGTCGTGGGGTAGAAGTCCCGGGAACAAGCAGACGAGTGATgtaagtcgca ... gtgtgggcagCCTGCATGGGGGCACCACCAAGACCCGAATCAATGGAATGCAGCTGGGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggaggagtatttgctgacggggtgggtggtttgttttggttttgtgtgggcagCCTGCATGGGGGCACCACCAAGACCCGAATCAATGGAATGCAGCTGGGTATTACCAAGGGTATGCACAAGGGTACGACCAATACGGATATCCGGCGCCGG
             tgctgac  putative branch site (score: 2)
                               tttgtttt  TA-rich tract