Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgctcgtctcttgaatatcgtcattattttactccgctccacatgatctgttcttcaaacgcagttaaatctgagagatttatgtttgctcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTCAGGGCTCTATTGGATGTCGGCCTTGTGAGGACTACCACCGGAAACAGGG

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374993|gb|DC956403.1|DC956403
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208389889|gb|DC937720.1|DC937720
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208362062|gb|DC950497.1|DC950497
EST:     GGCA-TTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|37830926|gb|BJ588938.1|BJ588938
EST:     TTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         NCANCCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: TTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162279516|gb|FC455827.1|FC455827
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162208025|gb|FC384220.1|FC384220
EST:     GAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|18355260|gb|BJ187319.1|BJ187319
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162216779|gb|FC393612.1|FC393612
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|19779720|gb|BQ039469.1|BQ039469
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162208344|gb|FC384656.1|FC384656
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|19788553|gb|BQ040790.1|BQ040790
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|19781204|gb|BQ039665.1|BQ039665
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|22491783|gb|BU051706.1|BU051706
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162266657|gb|FC442836.1|FC442836
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208380836|gb|DC923318.1|DC923318
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|100430202|gb|BY959750.1|BY959750
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACNATGTTGAGGAAGGTGAGGGAAAAAAGGC-ATT
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAA-GGCCATT
EST: gi|162279515|gb|FC455826.1|FC455826
EST:     GGCATNTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162232207|gb|FC408056.1|FC408056
EST:     GAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208380825|gb|DC923307.1|DC923307
EST:     GGCA-TTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208366885|gb|DC951372.1|DC951372
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162234040|gb|FC410722.1|FC410722
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208397433|gb|DC916359.1|DC916359
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|37843754|gb|BJ601762.1|BJ601762
EST:     ATCAGGAGTATGTTGGGAACGAGACG                         GCANCCGGAGAGGACTACAATGTTGAGGAGGGTGAGGGAAAAAGGCCATTC
genomic: ATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162233763|gb|FC410029.1|FC410029
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162273382|gb|FC449831.1|FC449831
EST:     GAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|18373232|gb|BJ204834.1|BJ204834
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAGGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208382321|gb|DC919309.1|DC919309
EST:     GATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|18329908|gb|BJ161914.1|BJ161914
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGC
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|19788241|gb|BQ040741.1|BQ040741
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|18347318|gb|BJ179364.1|BJ179364
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67696812|gb|BJ957045.1|BJ957045
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|15728298|gb|BI740717.1|BI740717
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67725048|gb|BJ975307.1|BJ975307
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208373996|gb|DC944729.1|DC944729
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162208343|gb|FC384655.1|FC384655
EST:     GCA-TTGAAGAAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GCATTTGAAG-AACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162215585|gb|FC391664.1|FC391664
EST:     GAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67725362|gb|BJ975621.1|BJ975621
EST:     GATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162239199|gb|FC416481.1|FC416481
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|67723671|gb|BJ973930.1|BJ973930
EST:     GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
EST: gi|162275293|gb|FC451477.1|FC451477
EST:     GGCA-TTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG                         GCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC
genomic: GGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 101

CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACGgttcgtgtgt ... tcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTCAGGGCTCTATTGGATGTCGGCCTTGTGAGGACTACCACCGGAAACAGGG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctgttcttcaaacgcagttaaatctgagagatttatgtttgctcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTCAGGGCTCTATTGGATGTCGGCCTTGTGAGGACTACCACCGGAAACAGGG
                                        tttgctc  CT-rich tract
                                 atttatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgctcgtctcttgaatatcgtcattattttactccgctccacatgatctgttcttcaaacgcagttaaatctgagagatttatgtttgctcgaatgcagGCAACCGGAGAGGACTACAATGTTGAGGAAGGTGAGGGAAAAAGGCCATTCAGGGCTCTATTGGATGTCGGCCTTGTGAGGACTACCACCGGAAACAGGG

- - - - - - - - - - - - - - - - - - - - cacatga