1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatgagttgtgctgcaacttttaaggatcggaaattagtttgtggtatcttcttccctcaacttaaagaccactaacgttcttttcactttccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG
species | Physcomitrella patens |
transcript | PP1S38_328V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATEST: gi|208397759|gb|DC911996.1|DC911996
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAEST: gi|162267081|gb|FC443312.1|FC443312
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAA
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATEST: gi|100370853|gb|BY948549.1|BY948549
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
EST: ATGACATCACCNATCCAGAGACATTCTTGAAAGCTCANTTCTGGGT-AAG GGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCA-EST: gi|162276874|gb|FC452556.1|FC452556
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagG-AGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAA
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATEST: gi|7648245|gb|AW739228.1|AW739228
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATEST: gi|162152195|gb|FC328174.1|FC328174
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
EST: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAG GAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
genomic: ATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGGGTTAAGgtgggtcgct ... tccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAAT
tatcttcttccctcaacttaaagaccactaacgttcttttcactttccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG
cactaac putative branch site (score: 1)
cgttcttttcactttc CT-rich tract
aacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgagttgtgctgcaacttttaaggatcggaaattagtttgtggtatcttcttccctcaacttaaagaccactaacgttcttttcactttccacaacagGAGCTGCAGAAGCATGGAAATCCTGACATTGTAATGGCTTTGGTTGGCAATAAAGCTGACCTCGAATATCAACGTGAAGTTACTCGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA