Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaattttttttaataccgtgattgtttcatctgcctctttggactttatagttcttgaaaacactttcagcgtggctaattgatgcacggatttaaacagGGACCGTTAGACGTTTCTTGGAGAAGCACAAGGACAAGATTACTGCTGTAGTCTTTTGCACATCAAATGCTACTGATACAGATATATATAAAAG

Basic information

species Physcomitrella patens
transcript PP1S37_110V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193972|gb|FC371785.1|FC371785
EST:     CACAGAAGCCAAAGCTTATCCAAGGGAGCCTGCTGCTCATGTTGCGATTC                         GGACCGTTAGACGTTTCTTGGAGAAGCACAAGGACAAGATTACTGCTGTAG
genomic: CACAGAAGCCAAAGCTTATCCAAGGGAGCCTGCTGCTCATGTTGCGATTCgtaagtacaa ... atttaaacagGGACCGTTAGACGTTTCTTGGAGAAGCACAAGGACAAGATTACTGCTGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatagttcttgaaaacactttcagcgtggctaattgatgcacggatttaaacagGGACCGTTAGACGTTTCTTGGAGAAGCACAAGGACAAGATTACTGCTGTAGTCTTTTGCACATCAAATGCTACTGATACAGATATATATAAAAG
                                             atttaaaca  TA-rich tract