1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgttggttgttttctagcatcacttatttaaagcagattgaagcccagctcattttttcgatgatggcacaattttaagcttgcatttgagtccagagtatctcgtgtctgttgcccaagtttcactattgagactttttttgggcaatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAACAAAAGTTGAGGTATGGTGAGAACCCACATCAGCGGGCTGCTTTCTACGA
species | Physcomitrella patens |
transcript | PP1S372_60V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATGACTCAGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTG AAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAACEST: gi|162159909|gb|FC336162.1|FC336162
genomic: TTATGACTCAGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTGgtacgttggt ... caatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAAC
EST: AGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTG AAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAACEST: gi|162177334|gb|FC353491.1|FC353491
genomic: AGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTGgtacgttggt ... caatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAAC
EST: TTATGACTCAGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTG AAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAAC
genomic: TTATGACTCAGCTGTGGCTGAGTGGTTATGGAAGCATCAACGAGATGGTGgtacgttggt ... caatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAAC
tctcgtgtctgttgcccaagtttcactattgagactttttttgggcaatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAACAAAAGTTGAGGTATGGTGAGAACCCACATCAGCGGGCTGCTTTCTACGA
acttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttggttgttttctagcatcacttatttaaagcagattgaagcccagctcattttttcgatgatggcacaattttaagcttgcatttgagtccagagtatctcgtgtctgttgcccaagtttcactattgagactttttttgggcaatttacagAAGAAACGACTGAATTCCCACCAAGTCTGACAGTACCTCTGAGCTTGAAACAAAAGTTGAGGTATGGTGAGAACCCACATCAGCGGGCTGCTTTCTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT