1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtcgttttataacgaacttaagttctctttgtaatcacacttattttatcttatcaccgcgttatgaataatacattcaatgttataatcactggactttccttactatgtatcgtcattatagtacaagcttttgacctgtgtctatcatgttttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCATTAAAGAAGGAATTGAGGCCGATGAGCTTGCAGAAATGTACACGAAAG
species | Physcomitrella patens |
transcript | PP1S371_31V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|67692369|gb|BJ952602.1|BJ952602
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|67700678|gb|BJ960911.1|BJ960911
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: GTCACGTTGCCGACTACATGAGG C-TTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|208373862|gb|DC956336.1|DC956336
genomic: GTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|18338022|gb|BJ170046.1|BJ170046
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|208360331|gb|DC949986.1|DC949986
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|67696699|gb|BJ956932.1|BJ956932
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCEST: gi|67691558|gb|BJ951791.1|BJ951791
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: ATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: ATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
tgtatcgtcattatagtacaagcttttgacctgtgtctatcatgttttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCATTAAAGAAGGAATTGAGGCCGATGAGCTTGCAGAAATGTACACGAAAG
ttttgac putative branch site (score: 3)
tgttttc putative PPT
attatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcgttttataacgaacttaagttctctttgtaatcacacttattttatcttatcaccgcgttatgaataatacattcaatgttataatcactggactttccttactatgtatcgtcattatagtacaagcttttgacctgtgtctatcatgttttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTCATTAAAGAAGGAATTGAGGCCGATGAGCTTGCAGAAATGTACACGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT