1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaaaataatggttttcatgatctatgttgtgaatcgatacaagtcattcagagaagcacaatagtctgtaagcatttacgagtcagtggattgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAAGCACGTGCTGAGTTAGGGCAAACCGATGCAGCTAAGGGAGACTTTGAGA
species | Physcomitrella patens |
transcript | PP1S364_48V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTG GTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAAEST: gi|208377355|gb|DC927043.1|DC927043
genomic: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTGgtacgttttg ... attgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAA
EST: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTG GTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAAEST: gi|208346599|gb|DC916865.1|DC916865
genomic: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTGgtacgttttg ... attgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAA
EST: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTG GTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAA
genomic: GTATGCTCAAAATACACCGCTTTGAGGAAGCCATCGGTCACTGCTCTGTGgtacgttttg ... attgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAA
cattcagagaagcacaatagtctgtaagcatttacgagtcagtggattgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAAGCACGTGCTGAGTTAGGGCAAACCGATGCAGCTAAGGGAGACTTTGAGA
attta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaataatggttttcatgatctatgttgtgaatcgatacaagtcattcagagaagcacaatagtctgtaagcatttacgagtcagtggattgctgtagGTGCTTGCTGAAGATCCGAAGAACACCAAAGCCTTATTTCGTCGCGGGAAAGCACGTGCTGAGTTAGGGCAAACCGATGCAGCTAAGGGAGACTTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT