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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacacgactgcttttagttaattacaaggtacctgtatgttaactatagcattgacgtgaaaaaagacacgatctcactatgtcctccttggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCTCTCACTACTAATGTAGTCATGACATCTGCCGCCGTCACTGCATCAGCC

Basic information

species Physcomitrella patens
transcript PP1S363_21V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67720213|gb|BJ970472.1|BJ970472
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|7583627|gb|AW699535.1|AW699535
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|162277674|gb|FC453305.1|FC453305
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|162234236|gb|FC409774.1|FC409774
EST:     TGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: TGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|162194164|gb|FC369481.1|FC369481
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|7207316|gb|AW561319.1|AW561319
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|18332715|gb|BJ164728.1|BJ164728
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|67723980|gb|BJ974239.1|BJ974239
EST:     TCGATTTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: TCGATT-CAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|7286516|gb|AW599003.1|AW599003
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|162194165|gb|FC369482.1|FC369482
EST:     ATCGATTCANAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|37845565|gb|BJ603573.1|BJ603573
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGNCGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: gi|19790725|gb|BQ042022.1|BQ042022
EST:     ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT                         ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcattgacgtgaaaaaagacacgatctcactatgtcctccttggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCTCTCACTACTAATGTAGTCATGACATCTGCCGCCGTCACTGCATCAGCC
                          atctcac  putative branch site (score: 3)
                                     tcctccttg  putative PPT
            tgaaaaaa  TA-rich tract