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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctgttccccttttttttttttttttttttttttttaaattaatctggacttgcaatccacccattcaatgtctgtatgattcataaactgatctagtaatttctcagtaataattacttatttcttcttttacatcgcatcctgattttttgcgattcgtatgatatggacagCGGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAAGCGGGGAATGGCCGGATTCAACTGAAAGAGTTGAAAAAGAGTAACTTAATTACTGCTCT

Basic information

species Physcomitrella patens
transcript PP1S34_411V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194704|gb|FC371551.1|FC371551
EST:     TCGCGGTCTAGAGTTCCTACATGATTCCCCGGAGTTTCAAGACAGATATG                         CGGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAAGCGGGGAATG
genomic: TCGCGGTCTAGAGTTCCTACATGATTCCCCGGAGTTTCAAGACAGATATGgtatgttctg ... atatggacagCGGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAAGCGGGGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcttcttttacatcgcatcctgattttttgcgattcgtatgatatggacagCGGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAAGCGGGGAATGGCCGGATTCAACTGAAAGAGTTGAAAAAGAGTAACTTAATTACTGCTCT
                     tcctgat  putative branch site (score: 3)
                        tgatttttt  TA-rich tract