1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtatctcttgcccttagtgtgtcctactcggcttccttcttacagttctctttttcctgccagaattcgtctttctgaacgtggtcattatgccaaacgtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCCCAGGAGGGTGGCAAGTGTTGGTGGACTACTATCAAGGACTGCAAAAGC
species | Physcomitrella patens |
transcript | PP1S331_37V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37849069|gb|BJ607077.1|BJ607077
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|162176154|gb|FC351090.1|FC351090
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|162204948|gb|FC380630.1|FC380630
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37853261|gb|BJ611269.1|BJ611269
genomic: TTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37848002|gb|BJ606010.1|BJ606010
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37850021|gb|BJ608029.1|BJ608029
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|67691750|gb|BJ951983.1|BJ951983
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|208372292|gb|DC948481.1|DC948481
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37821007|gb|BJ579073.1|BJ579073
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCANCTTTGCGAAGAACANCGAATCGCCNCCAGAAGGGTTTATGTGCEST: gi|37850056|gb|BJ608064.1|BJ608064
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|162176153|gb|FC351089.1|FC351089
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|37822990|gb|BJ581056.1|BJ581056
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCEST: gi|162204947|gb|FC380629.1|FC380629
genomic: TCTTCGATCCATCCAGGGCGCAGGACTTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
EST: TTTTTGTTCATTTCTGGTACCAAG ATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
genomic: TTTTTGTTCATTTCTGGTACCAAGgtgtgtatct ... gtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGC
ttcctgccagaattcgtctttctgaacgtggtcattatgccaaacgtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCCCAGGAGGGTGGCAAGTGTTGGTGGACTACTATCAAGGACTGCAAAAGC
tcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtatctcttgcccttagtgtgtcctactcggcttccttcttacagttctctttttcctgccagaattcgtctttctgaacgtggtcattatgccaaacgtttacgcagATGCGCAACTTTGCGAAGAACAACGAATCGCCACCAGAAGGGTTTATGTGCCCAGGAGGGTGGCAAGTGTTGGTGGACTACTATCAAGGACTGCAAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA