1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttgattaataccctttccttcgcctgttgtcattttggtgaaatagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTACGTTGCAGAGGAAGCGCCGCAGAATCGCTATCAAGAAAGAACGAGTTGC
species | Physcomitrella patens |
transcript | PP1S311_33V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|18339894|gb|BJ171921.1|BJ171921
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|37831873|gb|BJ589885.1|BJ589885
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|162220470|gb|FC396007.1|FC396007
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|162245074|gb|FC422926.1|FC422926
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|162220469|gb|FC396006.1|FC396006
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|15728503|gb|BI740820.1|BI740820
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|15730197|gb|BI741728.1|BI741728
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|7207711|gb|AW561708.1|AW561708
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|37844063|gb|BJ602071.1|BJ602071
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|37843893|gb|BJ601901.1|BJ601901
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTAEST: gi|162206668|gb|FC382426.1|FC382426
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
gttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTACGTTGCAGAGGAAGCGCCGCAGAATCGCTATCAAGAAAGAACGAGTTGC
gactgac putative branch site (score: 2)
tttttc putative PPT
atcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgattaataccctttccttcgcctgttgtcattttggtgaaatagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTACGTTGCAGAGGAAGCGCCGCAGAATCGCTATCAAGAAAGAACGAGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC