1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcagctcaactttgtggacgtttggaacatagacgacggttgtcatccttgtgaagccaaaatctttcagctcgcaagttacttcctcatgattttgcatatctgatggtgttttgactggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGAGCTCACTCCAGAGGAACTGAAGGAGGTTGCAGCAGCAGTGCCAGAACA
species | Physcomitrella patens |
transcript | PP1S309_8V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGEST: gi|208363278|gb|DC954408.1|DC954408
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGEST: gi|162258908|gb|FC435851.1|FC435851
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGEST: gi|208398593|gb|DC916114.1|DC916114
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGEST: gi|208385706|gb|DC952867.1|DC952867
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGEST: gi|162258907|gb|FC435850.1|FC435850
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
EST: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAG GAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
genomic: GGCTCTTGCTTGGGTTCTTCACCAGGGGGAAGACGTCGTACCTATCCCAGgttcagctca ... ggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGG
caagttacttcctcatgattttgcatatctgatggtgttttgactggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGAGCTCACTCCAGAGGAACTGAAGGAGGTTGCAGCAGCAGTGCCAGAACA
ttttgac putative branch site (score: 6)
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagctcaactttgtggacgtttggaacatagacgacggttgtcatccttgtgaagccaaaatctttcagctcgcaagttacttcctcatgattttgcatatctgatggtgttttgactggctttgcagGAACTACTAAGATTCCCAACTTAAACGAAAACATAGGGGCGATATCTGTGGAGCTCACTCCAGAGGAACTGAAGGAGGTTGCAGCAGCAGTGCCAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG