1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatgatggttcctttagaggtctttgagcatgtttgggtgtcatttgtgggtgcttttacattgagcaagacttaatttggatgatgatgtaaatggtttctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACGTGGTGCTGGACAGAACATTATTCCCAGCTCAACTGGAGCTGCGAAG
species | Physcomitrella patens |
transcript | PP1S309_73V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTEST: gi|208369274|gb|DC956065.1|DC956065
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGT
EST: GGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGAC-GTCCATCTGGAAAGGACTGGCGTGGAGGACEST: gi|162152341|gb|FC328528.1|FC328528
genomic: GGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: CCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACEST: gi|67726807|gb|BJ977066.1|BJ977066
genomic: CCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACEST: gi|208388488|gb|DC957070.1|DC957070
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACEST: gi|208394113|gb|DC957194.1|DC957194
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACEST: gi|67726975|gb|BJ977234.1|BJ977234
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: CATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG CTACCCAGAAGACCGTGGACGGTCCCATCTGGAAAGGACTGGCGTGGAGGAEST: gi|208389399|gb|DC953237.1|DC953237
genomic: CATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGT-CCATCTGGAAAGGACTGGCGTGGAGGA
EST: TGTGCATGCCACCACTG CTA-CCAGAAG-NCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: TGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
tttacattgagcaagacttaatttggatgatgatgtaaatggtttctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACGTGGTGCTGGACAGAACATTATTCCCAGCTCAACTGGAGCTGCGAAG
acttaat putative branch site (score: 4)
tttctgt putative PPT
acttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgatggttcctttagaggtctttgagcatgtttgggtgtcatttgtgggtgcttttacattgagcaagacttaatttggatgatgatgtaaatggtttctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGACGTGGTGCTGGACAGAACATTATTCCCAGCTCAACTGGAGCTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC