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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctatattttggtgttcttacattgtcggtctcggttgtggctgatgcttccgcgaactggtgcgatgtcccctggatgaattcgtcctcatacaaagctctcgacctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGAGTCTACCGGTGTCTTCACTGCCGTTGACAAAGCCTCTGCTCACTTCAAG

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180712|gb|FC357797.1|FC357797
EST:     GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAG                         GGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
genomic: GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAGgtaaacctat ... ctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
EST: gi|67570882|gb|BJ943706.1|BJ943706
EST:     GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAG                         GGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
genomic: GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAGgtaaacctat ... ctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
EST: gi|208362133|gb|DC943532.1|DC943532
EST:     GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAG                         GGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
genomic: GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAGgtaaacctat ... ctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
EST: gi|162156177|gb|FC332552.1|FC332552
EST:     GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAG                         GGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
genomic: GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAGgtaaacctat ... ctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
EST: gi|162268832|gb|FC445680.1|FC445680
EST:     GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAG                         GGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA
genomic: GACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGGTCTTCGGATGCAGgtaaacctat ... ctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgatgtcccctggatgaattcgtcctcatacaaagctctcgacctgttcgcagGGACCCTGCTGAAATCCCATGGGGATCAGTTGGAGCCGACTTCGTGGTAGAGTCTACCGGTGTCTTCACTGCCGTTGACAAAGCCTCTGCTCACTTCAAG
                                            cctgttc  CT-rich tract
               atgaatt  TA-rich tract