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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagtaatagttgtggtgggtgtacttggagacaagttgaatgcaaatggtagtgtctaataatattatcaagagtactttcttttaaggtacaaaaccagaaaaataagcaagtgatgaatgcagaagaggaggatattgatagtgtgggatttagggttgtaaaatgggttgttgttgttgttgttatgcagAAGTTCAGCCTTCACCTGATGTTGAATGCGGACCGTGAGTTTCTGGCACAAAAGAGTGCCCCACACCGCGACTTCTACAACGTGAGGAAGGTAGACACAC

Basic information

species Physcomitrella patens
transcript PP1S307_76V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S307_76V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 3'ss of exon 6
gtaaggagtaatagttgtggtgggtgtacttggagacaagttgaatgcaaatggtagtgtctaataatattatcaagagtactttcttttaaggtacaaaaccagaaaaataagcaagtgatgaatgcagaagaggaggatattgatagtgtgggatttagggttgtaaaatgggttgttgttgttgttgttatgcagAAGTTCAGCCTTCACCTGATGTTGAATGCGGACCGTGAGTTTCTGGCACAAAAGAGTGCCCCACACCGCGACTTCTACAACGTGAGGAAGGTAGACACAC
                                                                                                              |   |||        |  |       |   | ||  || | | ||   |  | || |||      || |   ||       ||| ||||| ||| ||||||| ||| |  | ||||| || || ||||||||||| || |||||||| ||||| ||||| ||||||||| | || ||||| || ||||
-------------------------------------------------------------------------------------------------------gtggtgtttttcaaacttcctttctacttttacattgtgttattaatattgg-cctgtgtttataac-----ttataactg--aacaatatacagAAATTCCGCCTTCATCTGTTAGTAAATGCAGATCGGGAGTTTCTGGCTCAGAAGAGTGCACCACATCGCGATTTCTACAACATTAGAAAGGTTGATACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagtgtgggatttagggttgtaaaatgggttgttgttgttgttgttatgcagAAGTTCAGCCTTCACCTGATGTTGAATGCGGACCGTGAGTTTCTGGCACAAAAGAGTGCCCCACACCGCGACTTCTACAACGTGAGGAAGGTAGACACAC
 tattgat  putative branch site (score: 3)
                    ttgtaaaat  TA-rich tract