1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgacgagttgttcgagaagacttcgtttctggtatgcggatgtctcagtaagcgggtgcgtgtgaatagtgatgtaaccgagacgggcttgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATAT
species | Physcomitrella patens |
transcript | PP1S306_43V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTG GTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCTEST: gi|100389546|gb|BY989024.1|BY989024
genomic: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTGgtgagtatct ... tgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCT
EST: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTG GTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCTEST: gi|100449000|gb|CJ973299.1|CJ973299
genomic: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTGgtgagtatct ... tgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCT
EST: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTG GTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCT
genomic: CTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTGgtgagtatct ... tgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCT
tcagtaagcgggtgcgtgtgaatagtgatgtaaccgagacgggcttgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATAT
atgtaac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgacgagttgttcgagaagacttcgtttctggtatgcggatgtctcagtaagcgggtgcgtgtgaatagtgatgtaaccgagacgggcttgttgtgcagGTGAAAGGGGAGCCCAATATCTCGTACATTTGTTCGCGGTACTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG