1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catgtttgtctttaacaatgattagtgtactttattatagatttttgatggtttttcatggcttaattaacactttctcgtctattcctgcttggtacagGCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTGGTGCAGTTCCAAGAGGAATGGGAAGGAGTATGTTAGTTTCCAGTGGTAT
species | Physcomitrella patens |
transcript | PP1S2_70V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCATTTTCATGAGAAGCTGCTGAAGCTGAAAGATCTCATGAAATCCCAG GCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTGEST: gi|67693321|gb|BJ953554.1|BJ953554
genomic: ACCATTTTCATGAGAAGCTGCTGAAGCTGAAAGATCTCATGAAATCCCAGgtattctgaa ... cttggtacagGCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTG
EST: ACCATTTTCATGAGAAGCTGCTGAAGCTGAAAGATCTCATGAAATCCCAG GCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTG
genomic: ACCATTTTCATGAGAAGCTGCTGAAGCTGAAAGATCTCATGAAATCCCAGgtattctgaa ... cttggtacagGCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTG
tgatggtttttcatggcttaattaacactttctcgtctattcctgcttggtacagGCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTGGTGCAGTTCCAAGAGGAATGGGAAGGAGTATGTTAGTTTCCAGTGGTAT
aattaac putative branch site (score: 2)
ctttctcgtctattcc CT-rich tract
ttaattaacacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttgtctttaacaatgattagtgtactttattatagatttttgatggtttttcatggcttaattaacactttctcgtctattcctgcttggtacagGCGGGCAAGAGAAGAGCAAAACAACGACACGAGTATATGTTGTCATTTCTGGTGCAGTTCCAAGAGGAATGGGAAGGAGTATGTTAGTTTCCAGTGGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG