1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttatttacttggatattgttcgatattgtgtaaacatgaacctacggtggtttttgctgaagttgggcctaatatgctattcatttcacactgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCTCAGCCTCTACATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGA
species | Physcomitrella patens |
transcript | PP1S29_256V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACCAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|18327390|gb|BJ159392.1|BJ159392
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|162182768|gb|FC359515.1|FC359515
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|19777824|gb|BQ039232.1|BQ039232
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|67726751|gb|BJ977010.1|BJ977010
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: TGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|67718262|gb|BJ968521.1|BJ968521
genomic: TGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|162176349|gb|FC353534.1|FC353534
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|67727852|gb|BJ978111.1|BJ978111
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: GGTGCATTCACTTGCTAATGGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTEST: gi|19789330|gb|BQ041244.1|BQ041244
genomic: GGTGCATTCACTTGCTAAT-GGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGT
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|162169758|gb|FC345295.1|FC345295
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|162176594|gb|FC353063.1|FC353063
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|67718833|gb|BJ969092.1|BJ969092
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTANCTGCTGTCEST: gi|100384688|gb|BY950678.1|BY950678
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: TTTCG-CTCCATCGACATCCTGGTGCATTCACTTGCTATTGGGGCCTGAA GTAACGAAGCCACTTATGAAGACCTCGCGCAAAGGTTACTTAEST: gi|100403476|gb|BY991219.1|BY991219
genomic: TT-CGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGG-CCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTA
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCEST: gi|162241271|gb|FC416902.1|FC416902
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
EST: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAA GTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
genomic: ACTTCGGCTCCATCGACATCCTGGTGCATTCACTTGCTAATGGGCCTGAAgtaagaactt ... ctgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTC
ggtggtttttgctgaagttgggcctaatatgctattcatttcacactgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCTCAGCCTCTACATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGA
gcctaat putative branch site (score: 6)
ctgtctcc putative PPT
tattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttacttggatattgttcgatattgtgtaaacatgaacctacggtggtttttgctgaagttgggcctaatatgctattcatttcacactgtctccagGTAACGAAGCCACTTATGGAGACCTCGCGCAAAGGTTACTTAGCTGCTGTCTCAGCCTCTACATACTCCTACGTCTCACTTTTGAAGTACTTTGCTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG