1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagagtttggccgcacaggctttcatatataacaatctttacaacaaacttcctagagattgtttcatgttttccttgaaatcaacagcatttgatgaacatgatgttcctaatgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
species | Physcomitrella patens |
transcript | PP1S295_30V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208392737|gb|DC953634.1|DC953634
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|100414507|gb|BY992807.1|BY992807
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|162260165|gb|FC436300.1|FC436300
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208363026|gb|DC946909.1|DC946909
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208367886|gb|DC950953.1|DC950953
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|162278111|gb|FC453930.1|FC453930
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208377957|gb|DC910961.1|DC910961
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208375008|gb|DC956404.1|DC956404
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208374777|gb|DC932046.1|DC932046
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|162278110|gb|FC453929.1|FC453929
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208349948|gb|DC913656.1|DC913656
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208361176|gb|DC954282.1|DC954282
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208399342|gb|DC924772.1|DC924772
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|37845291|gb|BJ603299.1|BJ603299
genomic: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208386340|gb|DC932836.1|DC932836
genomic: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAGEST: gi|208387111|gb|DC941283.1|DC941283
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
tgttttccttgaaatcaacagcatttgatgaacatgatgttcctaatgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
tcctaat putative branch site (score: 5)
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagtttggccgcacaggctttcatatataacaatctttacaacaaacttcctagagattgtttcatgttttccttgaaatcaacagcatttgatgaacatgatgttcctaatgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG