1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagggcatgatcttgcagtcttttactcactatcttttctgtggtgctccctcatgaaatatgcagtttttaggtgttttccaaatcatcttgatcacatcagcctttgatggagtaggtgtttgtattgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
species | Physcomitrella patens |
transcript | PP1S295_28V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAG TTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAGEST: gi|67724795|gb|BJ975054.1|BJ975054
genomic: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAGgtagggcatg ... ttgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
EST: CTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAG TTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAGEST: gi|67508414|gb|BJ941281.1|BJ941281
genomic: CTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAGgtagggcatg ... ttgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
EST: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAG TTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAANEST: gi|208355715|gb|DC910613.1|DC910613
genomic: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAGgtagggcatg ... ttgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
EST: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAA-GATTTTCTTTGCAG TTGTTTCGCTNGTGGCCGCGCTG
genomic: GTATACTCCAAGCTCTCTTATGCTGACTGTGGCAAAGATTTTCTTTGCAGgtagggcatg ... ttgtttgcagTTGTTTCGCTTGTGGCCGCGCTG
aaatcatcttgatcacatcagcctttgatggagtaggtgtttgtattgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggcatgatcttgcagtcttttactcactatcttttctgtggtgctccctcatgaaatatgcagtttttaggtgttttccaaatcatcttgatcacatcagcctttgatggagtaggtgtttgtattgtttgcagTTGTTTCGCTTGTGGCCGCGCTGGGATTCATAATATATGGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG