1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacggtcactgccttggtcgcaagtctttgtcgatcccttctgatttcggttgcgtgagcgggtgatgttgatctcattcgaatacaccgaatacagtttgtggaggttcgcccctgacagtgttggaattgtggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAAGATGACTATGAACAGCCAAGGATGCTGTGGCAGAAGATGTCGAAGGAA
species | Physcomitrella patens |
transcript | PP1S292_18V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGA GCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAEST: gi|161981616|gb|EE296074.1|EE296074
genomic: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGAgtacggtcac ... ggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCA
EST: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGA GCCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGNEST: gi|162267114|gb|FC443345.1|FC443345
genomic: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGAgtacggtcac ... ggtcgtgcagGC-ATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAG-
EST: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGA GCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAEST: gi|162277699|gb|FC453538.1|FC453538
genomic: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGAgtacggtcac ... ggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCA
EST: AAGAGTTGCCACGTCCCGATCTTTCTCAACCCGAAGTGCACCCCTACGA GCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAEST: gi|162267113|gb|FC443344.1|FC443344
genomic: AAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGAgtacggtcac ... ggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCA
EST: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGA GCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCA
genomic: GAAGAGTTGCCACGTCCCGATCCTTCTCAACCCGAAGTGCACCCCTACGAgtacggtcac ... ggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCA
cgaatacagtttgtggaggttcgcccctgacagtgttggaattgtggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAAGATGACTATGAACAGCCAAGGATGCTGTGGCAGAAGATGTCGAAGGAA
ccctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggtcactgccttggtcgcaagtctttgtcgatcccttctgatttcggttgcgtgagcgggtgatgttgatctcattcgaatacaccgaatacagtttgtggaggttcgcccctgacagtgttggaattgtggtcgtgcagGCATGCAGGAGGAACCGTGTCTAAAGCTCCGCCCCGCAAGTGGTCCGAGCAAGATGACTATGAACAGCCAAGGATGCTGTGGCAGAAGATGTCGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA