1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtatcaacaaatctctagttcgttttggcatggagttcacaatgtgctcttcaagcttcgttgtatgctaaactctactgcaatactgctacggcgtgccttttcttttttcgaagtatgatatgatgacctaatggtctttttgaatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAATGAGGCTAAAGCTTGATCATAGCTCATAACCCTCTCACAGGACGTAATG
species | Physcomitrella patens |
transcript | PP1S279_9V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAG GAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAAEST: gi|208394040|gb|DC957121.1|DC957121
genomic: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAGgtttgtatca ... aatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
EST: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAG GAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAAEST: gi|37837945|gb|BJ595953.1|BJ595953
genomic: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAGgtttgtatca ... aatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
EST: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAG GAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAAEST: gi|162172158|gb|FC349347.1|FC349347
genomic: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAGgtttgtatca ... aatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
EST: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAG GAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAAEST: gi|37825597|gb|BJ583663.1|BJ583663
genomic: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAGgtttgtatca ... aatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
EST: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAG GAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
genomic: AAGTTAGCAGCTTACCGTGGTGGCAAACACAGGACGCTCACAAGGATCAGgtttgtatca ... aatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAA
ttttcttttttcgaagtatgatatgatgacctaatggtctttttgaatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAATGAGGCTAAAGCTTGATCATAGCTCATAACCCTCTCACAGGACGTAATG
acctaat putative branch site (score: 53)
tttttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatcaacaaatctctagttcgttttggcatggagttcacaatgtgctcttcaagcttcgttgtatgctaaactctactgcaatactgctacggcgtgccttttcttttttcgaagtatgatatgatgacctaatggtctttttgaatacgacagGAATTCCATGGAGACAGTCAGACGCCTCATACTCCTGCATCTGGTAGCCAATGAGGCTAAAGCTTGATCATAGCTCATAACCCTCTCACAGGACGTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA