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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgactcctgttttagtaagagtacagcagttaacgacttacatactatgtgtgtatgagaattattgtcttgaaagtgaatgtgtctcttggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTGCATACAATCAAAAACAGACAATGGTCCATATTTAAAACCTCAGCCATCA

Basic information

species Physcomitrella patens
transcript PP1S271_49V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386675|gb|DC929121.1|DC929121
EST:     GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG                         GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: gi|208374444|gb|DC940717.1|DC940717
EST:     GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG                         GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: gi|162240378|gb|FC419311.1|FC419311
EST:     GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG                         GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: gi|208392443|gb|DC907920.1|DC907920
EST:     GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG                         GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtgtgtatgagaattattgtcttgaaagtgaatgtgtctcttggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTGCATACAATCAAAAACAGACAATGGTCCATATTTAAAACCTCAGCCATCA
                                      tgtctctt  CT-rich tract
             agaattatt  TA-rich tract