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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcacctcgttcacattccagcagatgcctaaactctactatcatgctactatccaagctctattttactaaagccttgtctggtttgcagAAGTAAGCAATCAAATGCTGGAATTGTATGAGCAGAACAAATCCAATGGTCCGACAGGCTCCCTTGCCAATGATCCAAGCCCCTCAGAAATGAATCGTGG

Basic information

species Physcomitrella patens
transcript PP1S264_33V6.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 6
lower sequence: EFJ27727 (Selaginella moellendorffii), 3'ss of exon 5
------------gttggtcacctcgttcacattccagcagatgcctaaactctactatcatgctactatccaagctctattttactaaagccttgtctggtttgcagAAGTAAGCAATCAAATGCTGGAATTGTATGAGCAGAACAAATCCAATGGTCCGACAGGCTCCCTTGCCAATGATCCAAGCCCCTCAGAAATGAATCGTGG
            |    | |     |  |  |||||         |    |  | | ||||| |  |||  |        |  ||      | | | |  ||||||||||| |||||||||||||||||| | || |||||||||                                                              
gtacgttctctggactttgatagactctagtttccattgttcttttttgtttcattttcatggtcgtattgagaaagggatgcac--gtctcctatttt-tttgcagAAGTCAGCAATCAAATGCTGGAACTCTACGAGCAGAAC--------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatcatgctactatccaagctctattttactaaagccttgtctggtttgcagAAGTAAGCAATCAAATGCTGGAATTGTATGAGCAGAACAAATCCAATGGTCCGACAGGCTCCCTTGCCAATGATCCAAGCCCCTCAGAAATGAATCGTGG
                              tactaaa  putative branch site (score: 1)
                                      ccttgtct  CT-rich tract
                       tctattttactaaa  TA-rich tract