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...gtagggttagttttctgtgataggaatcagagatttgaaagttgggcagctttgaactttgatggcatatttaatggaacgtagtgttaattctgaccagGTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGCTATATACGAGGCTCTGGTGAAGGATGAGAGCTCGTATTCTGATACTGCC
species | Physcomitrella patens |
transcript | PP1S257_89V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCCAACACTACCTGAGTTGAGGCGGATCTACTACGAGCTTATGATCAG GTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGCEST: gi|100403833|gb|BY955124.1|BY955124
genomic: GTGCCAACACTACCTGAGTTGAGGCGGATCTACTACGAGCTTATGATCAGgtttgtctgt ... ttctgaccagGTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGC
EST: GTGCCAACACTACCTGAGTTGAGGCGGATCTACTACGAGCTTATGATCAG GTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGC
genomic: GTGCCAACACTACCTGAGTTGAGGCGGATCTACTACGAGCTTATGATCAGgtttgtctgt ... ttctgaccagGTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGC
gcagctttgaactttgatggcatatttaatggaacgtagtgttaattctgaccagGTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGCTATATACGAGGCTCTGGTGAAGGATGAGAGCTCGTATTCTGATACTGCC
tgttaat putative branch site (score: 1)
atatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggttagttttctgtgataggaatcagagatttgaaagttgggcagctttgaactttgatggcatatttaatggaacgtagtgttaattctgaccagGTACTATGCACATAACCATGAGTATCTGGAAATGTGTCGGAGCTATATGGCTATATACGAGGCTCTGGTGAAGGATGAGAGCTCGTATTCTGATACTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT