1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggatcaaactccagtcgcatacaattcacccttatgttctttccaacgtgcttcttgatctagattctaatctaagtgtatttgtcttctatggctgtggcgcattaacatttcagGTAATCACAAAAACATCTTCAATGATGCCGGTGTTCCATGGAAAGAGTACCGCTACTTCGATCCTAAGACCGTAGGGTTGGATTTCGAAGGCATGATTGA
species | Physcomitrella patens |
transcript | PP1S245_98V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAACGTTACTTTCCTGGCAC-ACGGGTTACATCTCTTCTCCGACTTGGG -TAATCACAAAAACATCTTCAATGATGCGGGTG
genomic: ACAACGTTACTTCCCTGGCACCACGGTTTACATCTCTTCTCCGACCTGGGgtatggatca ... aacatttcagGTAATCACAAAAACATCTTCAATGATGCCGGTG
agattctaatctaagtgtatttgtcttctatggctgtggcgcattaacatttcagGTAATCACAAAAACATCTTCAATGATGCCGGTGTTCCATGGAAAGAGTACCGCTACTTCGATCCTAAGACCGTAGGGTTGGATTTCGAAGGCATGATTGA
cattaac putative branch site (score: 40)
attaacattt TA-rich tract