1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgaagacaccaacatctggtcatctgaaatatagaatttgagaaatctcaacagtgtgctctgggatcatttacatcaaagtggtcgtgaagttctgatcgagaagtttttttttctttttttttttttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGATGATGCCC
species | Physcomitrella patens |
transcript | PP1S243_27V6.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|162269879|gb|FC445396.1|FC445396
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|162232053|gb|FC409127.1|FC409127
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|37835783|gb|BJ593795.1|BJ593795
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: GACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|162232054|gb|FC409128.1|FC409128
genomic: GACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|208351466|gb|DC926312.1|DC926312
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTNTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGEST: gi|100420723|gb|BY993477.1|BY993477
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: TGACGACTACTGGCATCATTGGACTGATGGTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATEST: gi|208382440|gb|DC927974.1|DC927974
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTAT
EST: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
ggtcgtgaagttctgatcgagaagtttttttttctttttttttttttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTGATGATGCCC
ttctgat putative branch site (score: 3)
tttttttttctttttt putative PPT
atcgagaagttttttt TA-rich tract