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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtttgtcactttttctgtcatgattttttggattttttgtaggttagttggttgggtcagaaagaataatgcaatgaccagatctatctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTGGAGAGAGAATTGGGACGTTGATTGATGTTGGCATGGGAAATCAAATGAT

Basic information

species Physcomitrella patens
transcript PP1S241_40V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189094|gb|FC365212.1|FC365212
EST:     AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTG                         TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
genomic: AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTGgtgtggctcc ... ctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
EST: gi|37837246|gb|BJ595254.1|BJ595254
EST:     AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTG                         TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
genomic: AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTGgtgtggctcc ... ctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
EST: gi|208357194|gb|DC926541.1|DC926541
EST:     AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTG                         TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
genomic: AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTGgtgtggctcc ... ctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
EST: gi|208365430|gb|DC950897.1|DC950897
EST:     AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTG                         TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
genomic: AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTGgtgtggctcc ... ctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
EST: gi|162254002|gb|FC430636.1|FC430636
EST:     AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTG                         TGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG
genomic: AGTCATGGACATCACGGCCATCACTCTCTGTCAAGAGAACTGCATTCCTGgtgtggctcc ... ctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagttggttgggtcagaaagaataatgcaatgaccagatctatctgtttgcagTGGTTGTGTTCAATTTGAGCAAGGCAGGCAACATCTCAAAAGCTCTAAGTGGAGAGAGAATTGGGACGTTGATTGATGTTGGCATGGGAAATCAAATGAT
                                        tctatct  CT-rich tract
                  aaagaataat  TA-rich tract