1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agctttaaacatatacacatatcaaaatatgtattcttttgtataatcttcattaaacctatggttgcttaaagctaaaatttaacgtgtgtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATTACATCTCTCATGGTTGTGGAGCTTAACAACGTGAGGAGGCAAGAACAA
species | Physcomitrella patens |
transcript | PP1S237_60V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|162215024|gb|FC391312.1|FC391312
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|162153743|gb|FC329146.1|FC329146
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTNTCAGGCGGTTCTGTCGGAGTCATEST: gi|162154879|gb|FC331921.1|FC331921
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTTGGAGTCATEST: gi|162154880|gb|FC331922.1|FC331922
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|162150938|gb|FC327418.1|FC327418
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|19785698|gb|BQ040360.1|BQ040360
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGC---- T-AAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|208382991|gb|DC927741.1|DC927741
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGNTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|162215023|gb|FC391311.1|FC391311
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAG TGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATEST: gi|67694476|gb|BJ954709.1|BJ954709
genomic: ACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
EST: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGC---- T-AAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
genomic: ACATCCTACGCAGATTTCATTCGCCATATACACCTTCCCATGCAGCTAAGgtgctttcaa ... gtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCAT
atcttcattaaacctatggttgcttaaagctaaaatttaacgtgtgtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATTACATCTCTCATGGTTGTGGAGCTTAACAACGTGAGGAGGCAAGAACAA
atttaac putative branch site (score: 10)
ttaaagctaaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctttaaacatatacacatatcaaaatatgtattcttttgtataatcttcattaaacctatggttgcttaaagctaaaatttaacgtgtgtgggcgtagTGAAGTGGATCCTATAGTGGCATCGTTTTCAGGCGGTTCTGTCGGAGTCATTACATCTCTCATGGTTGTGGAGCTTAACAACGTGAGGAGGCAAGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC