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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatttgtcaatttttgcttggaagtctgtacgtcaaggggacttggagtagttttcataggtttatggctgaaatttgattttgagtttctgagttctttctgctggttgcagGATTCTCTTGGGGGAAATAGTAGAACGGTCATGATTG

Basic information

species Physcomitrella patens
transcript PP1S237_18V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------------------gtatgaatt-tgtcaat---ttttgcttggaagtctgtacgtcaaggggacttggagtagttttcataggtttatggctgaaat--ttgattttgagtttctgagttctttctgctggttgcagGATTCTCTTGGGGGAAATAGTAGAACGGTCATGATTG
                                              |||   ||| |  | ||   | |   ||| ||  |||||    |     ||| | | |    |  | |    ||||  | |  |     |||||   ||   ||  || ||    |   |||||||||||||||| |||||||||| ||| |||||||| |
gttcatttctatctttgcacttctacatcctgatatgtgtaacactgtacatattataactatacatatgatttgtaacactgtag--tatctttactggcatttaactatacatacatatgattcatgtgacaaattttccattaaagatgtcctttacattactgcagGATTCTCTTGGTGGAAATAGTAAAACAGTCATGATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtttatggctgaaatttgattttgagtttctgagttctttctgctggttgcagGATTCTCTTGGGGGAAATAGTAGAACGGTCATGATTG
               atttgat  putative branch site (score: 5)
                                    ttctttctgct  putative PPT
           tgaaatttgatttt  TA-rich tract