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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttccctaccgatcacatctttcaggtgtagaccttcaatatgcatcctgagaatcgattacttcatttaattaatctgtgtttgagaagcctttggttactttttcgggtgtgctgatatgttttgggttgtcacagGTAAGTACACACCACAATATGTCTGGTTGAAAGATGAGCTTAAGAAAGTCAACAGGAAAGTGACTCCGTGGCTCATCATTTTGGTGCATTCGCCGTGGTA

Basic information

species Physcomitrella patens
transcript PP1S235_62V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208370970|gb|DC944345.1|DC944345
EST:     CAGGCGTGGACCAGCTCATATCATTGTTCTCTCATCCTATTCTGCCTACG                         GTAAGTACACACCACAATATGTCTGGTTGAAAGATGAGCTTAAGAAAGTCA
genomic: CAGGCGTGGACCAGCTCATATCATTGTTCTCTCATCCTATTCTGCCTACGgtattcttcc ... gttgtcacagGTAAGTACACACCACAATATGTCTGGTTGAAAGATGAGCTTAAGAAAGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaagcctttggttactttttcgggtgtgctgatatgttttgggttgtcacagGTAAGTACACACCACAATATGTCTGGTTGAAAGATGAGCTTAAGAAAGTCAACAGGAAAGTGACTCCGTGGCTCATCATTTTGGTGCATTCGCCGTGGTA
                             tgctgat  putative branch site (score: 3)
              ttacttttt  TA-rich tract