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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcaagttgtgctccttggcccctgaatgcatttcctagctttttaagttgttttttttccggaggtttgaacgtaagtttctctgcagGTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAG

Basic information

species Physcomitrella patens
transcript PP1S22_429V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_429V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 3'ss of exon 6
gtatgtagcaagttgtgctccttggcccctgaatgcatttcctagctttttaagttgttttttttccggaggtttgaacgtaagtttctctgcagGTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAG
    |||   | | ||   | |      ||     |||       | | || ||||    |            |||||         || |  ||||||||| | |||||||||||||| || ||||| || || || || ||||| || || ||||| ||||||||||| ||  | |||
----gtaagca-tcgtttacataaatatctcgtgccatg----gacctcttgagtt----tgcagtaaagaaattgaataatttcaactatctagGTGGTCACTTGGAGCAATCATGTATGAAATGCTAGTGGGCTATCCCCCATTCTATTCTGATGAGCCTATGACAACTTGCAGAAAG

upper sequence: PP1S22_429V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT1G03920.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtagcaagttgtgctccttggcccctgaatgcatttcctagctttttaagttgttttttttccggaggtttgaacgtaagtttctctgcagGTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAG
||| ||    |    ||    ||      | ||    ||  | |       ||   ||   |  |  | | ||||  |   ||   ||    |||||||||| | ||||| || |||||||| |||||||||||||| || || |||||| |||| || || ||| | || ||| | |||
gtacgtgtacacacttgtctatt-----ttcaacttgttaacaaagaacaaaaaa-gtaagtccttagaatgtttttaaaaaatcctc----cagGTGGTCACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACCCAATGTCTACTTGTAGAAAG

upper sequence: PP1S22_429V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT1G30640.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgtagcaagttgtgctccttggcccctgaatgcatttcctagctttttaagttgttttttttccggaggtttgaacgtaagtttctctgcagGTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAG
           |||      |  | |||||     |  ||     || |  || |  ||| ||     ||  ||  ||     |||   |   ||||||||  | ||||||||||||| ||||||||| || ||||  || ||||| || ||||| |||||| || |||||||| | |||
-----------gttagtgaaccagacccct-----ctcttttacactctacaattaatttattcagttgaaattctaaaaactgttctacaatagGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagctttttaagttgttttttttccggaggtttgaacgtaagtttctctgcagGTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAG
                                            tttctctgc  CT-rich tract
      tttttaagttgttttt  TA-rich tract