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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcgcatccccgtgtcaattttttgtttgcttgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgcaattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtagGACGTGGGCCAGTCGATTTTGGAAAGTTACTCTAGAGTGTTGGAGAGTTTGGCCTTCAACATCATTGCACGTATTGACGACGTCGTCTATGCCGATGACA

Basic information

species Physcomitrella patens
transcript PP1S22_225V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_225V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT4G38430.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagtcgcatccccgtgtcaattttttgtttgcttgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgc-aattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtagGACGTGGGCCAGTCGATTTTGGAAAGTTACTCTAGAGTGTTGGAGAGTTTGGCCTTCAACATCATTGCACGTATTGACGACGTCGTCTATGCCGATGACA
                                                                                                       ||||| ||   ||  || |||   || |||   ||   |  |    || ||||     |  | |  | ||||  || |  | |  | |||| || || || || ||| |||| ||||||||||| ||| |||||||  |||||||||||||||  ||  | || || || ||  | ||||  |||||  
------------------------------------------------------------------------------------------------------gtacattat---agtttggagtgtgctttgctggttgcatcatgaaacgatgcttagataatttaa-gagtttgtgtgtgtt-cttgcagGATGTAGGGCAATCAATTCTGGAGAGTTACTCTAGGGTGATGGAGAGCATGGCCTTCAACATCACGGCCAGAATAGATGATGTGCTTTATGTTGATGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtagGACGTGGGCCAGTCGATTTTGGAAAGTTACTCTAGAGTGTTGGAGAGTTTGGCCTTCAACATCATTGCACGTATTGACGACGTCGTCTATGCCGATGACA
                        agctgac  putative branch site (score: 3)
                                   ttttcgtcttctgc  putative PPT
     tttatgt  TA-rich tract