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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctccacttgatcctatgatgcgtttgtggtttattcgatttagaagtaggccataaactattcggatctttatctgacattcatcttgtgatcaataaaatcttcgcatgctctcagaatttactgtttgatgttctggtctgtggtattcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162165174|gb|FC341676.1|FC341676
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
EST: gi|162170244|gb|FC347364.1|FC347364
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAN
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGA-
EST: gi|162220370|gb|FC395738.1|FC395738
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTTCTTTGTACCTATCTGG
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTT-CTTTGTACCTATCTGG
EST: gi|162257683|gb|FC433610.1|FC433610
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTT
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTT
EST: gi|162263641|gb|FC440125.1|FC440125
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
EST: gi|162168431|gb|FC344407.1|FC344407
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACC
EST: gi|162149665|gb|FC326716.1|FC326716
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
EST: gi|162162513|gb|FC338607.1|FC338607
EST:     AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG                         TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcatgctctcagaatttactgtttgatgttctggtctgtggtattcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG
                      gtttgat  putative branch site (score: 5)
            agaattta  TA-rich tract