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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcagtattatgttttagaaagtggatgatacgttagtgggttgtaataggattcattgacttgcatcagcataaccgggacgagctttttctactgcagGCCGCACAAGCAGTGCTAGCAGGCGTTTGCGTGGACCTATTTGCTGTCACAAATGAGTACACTAATTTGGCCTCACTCAAGTATCTGAGTATAGAAAGCG

Basic information

species Physcomitrella patens
transcript PP1S220_95V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S220_95V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
agcagtattatgttttagaaagtggatgatacgttagtgggttgtaataggattcattgacttgcatcagcataaccgggacgagctttttctactgcagGCCGCACAAGCAGTGCTAGCAGGCGTTTGCGTGGACCTATTTGCTGTCACAAATGAGTACACTAATTTGGCCTCACTCAAGTATCTGAGTATAGAAAGCG
                      |  |   || |||| ||  |  |     |   ||||  ||   |   | | ||  |  |       ||| || | ||||| ||    || || | |||||| || || || ||| ||||||| || ||||||||||||||| ||||||| || || || | ||||||||| ||||| |
-------------------gtatttaacttatgttattgt-tactcccgtgtcccatttcctaaaagtggaagaattgaca-------tttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataggattcattgacttgcatcagcataaccgggacgagctttttctactgcagGCCGCACAAGCAGTGCTAGCAGGCGTTTGCGTGGACCTATTTGCTGTCACAAATGAGTACACTAATTTGGCCTCACTCAAGTATCTGAGTATAGAAAGCG
                        gcataac  putative branch site (score: 3)
                                        ctttttctact  putative PPT
                                         tttttcta  TA-rich tract