1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaaatagtatcactgcctgtaatgcttatgaggatggggctttccttatcaaaggaagtgtgtgctatttagaatgagccttaagagagggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGGCACGGCTAGCGACGTTCCTAGATTCAGCAAAGTCCTTCAACATAATCT
species | Physcomitrella patens |
transcript | PP1S216_69V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGEST: gi|162265700|gb|FC443106.1|FC443106
genomic: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
EST: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGEST: gi|208364455|gb|DC958024.1|DC958024
genomic: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
EST: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGEST: gi|162265701|gb|FC443107.1|FC443107
genomic: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
EST: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGEST: gi|37838817|gb|BJ596825.1|BJ596825
genomic: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
EST: TTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGEST: gi|208369491|gb|DC955904.1|DC955904
genomic: TTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
EST: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAG CAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
genomic: TGAAGTCCGTAGAGCGATTGCAATCTTCAGTTGCTGAACTGTCTGCTAAGgtaattataa ... ggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGG
cttatcaaaggaagtgtgtgctatttagaatgagccttaagagagggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGGCACGGCTAGCGACGTTCCTAGATTCAGCAAAGTCCTTCAACATAATCT
tatttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaatagtatcactgcctgtaatgcttatgaggatggggctttccttatcaaaggaagtgtgtgctatttagaatgagccttaagagagggttttgcagCAAAGTTATAATCCCAATGAAGACTACGTGGATGCTGAAATAGAATTGCGGGCACGGCTAGCGACGTTCCTAGATTCAGCAAAGTCCTTCAACATAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG