1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attgacttctgttagggcccatattgctgcgcttactgcactaagcacgagattaaccgctaactacatgaattttggattatgcgttttgttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAACCGAGAAAAATTTGCGGGAACTTATCGAGTTCTGCATCAAGGAAAAGA
species | Physcomitrella patens |
transcript | PP1S215_28V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGT GTCCGAAGATTGGTTTTTATTCA-TCCAG-AAATCCAACTGGTCAATGTCTEST: gi|162214587|gb|FC390618.1|FC390618
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTAT-CAATCCAGGAAATCCAACTGGTCAATGTCT
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAAGATTGGTTTTTATCAATCCAEST: gi|100417952|gb|BY993265.1|BY993265
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCANGAAGGGGATTTGT GTCCGAAGATTGGTTTTTATNCA-TCCAGGAAATCCAACTGGTCAATGTCTEST: gi|162151638|gb|FC327767.1|FC327767
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTAT-CAATCCAGGAAATCCAACTGGTCAATGTCT
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATNCA-TCCAGGAAATCCAACTGGTCAATGTCTEST: gi|162153918|gb|FC329425.1|FC329425
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTAT-CAATCCAGGAAATCCAACTGGTCAATGTCT
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAAGATTGGTTTEST: gi|100392222|gb|BY953255.1|BY953255
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTT
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGT GTCCGAGGATTGGTTTT-ATCAATCCAGGAAATCCA-CTGGGTCA-TGTCTEST: gi|162152068|gb|FC328463.1|FC328463
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGG-TCAATGTCT
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGANATCCAACTGGTCAATGTCTAEST: gi|162155922|gb|FC332471.1|FC332471
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162176654|gb|FC352499.1|FC352499
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162178885|gb|FC354817.1|FC354817
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: GTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162186162|gb|FC361366.1|FC361366
genomic: GTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162177756|gb|FC354590.1|FC354590
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTTATCA-TCCAEST: gi|162178101|gb|FC354403.1|FC354403
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTT-ATCAATCCA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162161643|gb|FC339058.1|FC339058
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGANATCCAACTGGTCAATGTCTAEST: gi|162269857|gb|FC445387.1|FC445387
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGT GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162217937|gb|FC393933.1|FC393933
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAEST: gi|162151906|gb|FC328152.1|FC328152
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
EST: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGC GTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
genomic: CTAATGACCTGCGTAAATCTGTCACTGAAGCTCGCAGGAAGGGGATTTGTgtaagttggc ... gttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTA
cacgagattaaccgctaactacatgaattttggattatgcgttttgttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAACCGAGAAAAATTTGCGGGAACTTATCGAGTTCTGCATCAAGGAAAAGA
cgctaac putative branch site (score: 29)
ttttgtt putative PPT
atgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgacttctgttagggcccatattgctgcgcttactgcactaagcacgagattaaccgctaactacatgaattttggattatgcgttttgttgttttagGTCCGAGGATTGGTTTTTATCAATCCAGGAAATCCAACTGGTCAATGTCTAACCGAGAAAAATTTGCGGGAACTTATCGAGTTCTGCATCAAGGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - tgctgcg
- - - - - - - - - - - - - - - - -tactgca