1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggttcctactgcaacttgggcaacttcttgtggtttgatttatgtgttgcaatatcacaaacgatcgagaatgatcgtttcttgtgggtgatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTATGGAGG
species | Physcomitrella patens |
transcript | PP1S213_28V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTG GGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTAEST: gi|100414501|gb|BY992804.1|BY992804
genomic: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTGgtaggttcct ... gatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTA
EST: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTG GGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTAEST: gi|22492595|gb|BU052518.1|BU052518
genomic: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTGgtaggttcct ... gatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTA
EST: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTG GGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTAEST: gi|37824370|gb|BJ582436.1|BJ582436
genomic: TCATGTTCATTTTGCTACTGGCTTGCCTGAACAGGACGGTGTCATCAGTGgtaggttcct ... gatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTA
EST: GGTGTCATCAGTG GGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTA
genomic: GGTGTCATCAGTGgtaggttcct ... gatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTA
tgttgcaatatcacaaacgatcgagaatgatcgtttcttgtgggtgatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTATGGAGG
tgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcctactgcaacttgggcaacttcttgtggtttgatttatgtgttgcaatatcacaaacgatcgagaatgatcgtttcttgtgggtgatatatcagGGATGCGTGGATCTGCTCAGGTTCTCATATACCTGGATGTGGAGAAGGCTATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG